Table 2. The Frequency of Gut Microbial Genera and Species Reported to be Significantly Enriched in Atopic Dermatitis or Healthy Control Groups

Genus (Normal Control) Genus (Atopic Dermatitis) Species (Normal Control) Species (Atopic Dermatitis)
Actinomyces (2)AggregatibacterAgathobacter(2)Akkermansia(2)Alistipes*Anaerostipes*Anaerotruncus*AtopobiumBacteroides*Bifidobacterium(6)*BilophilaBlautia(2)*BulleidiaCandidatusSoleaferraCatenibacteriumChristensenellaceaeR-7group(2)Citrobacter*Clostridia*Clostridium(2)Clostridiumsensustricto1*Collinsella(3)*Coprobacillus*Coprococcus(2)Corynebacterium(2)DechloromonasDialister(2)*Dorea*Eggerthella(2)Enterobacter(2)*Enterococcus(2)*Epulopiscium*EscherichiaShigella*Erysipelatoclostridium*Eubacterium(2)EubacteriumcoprostanoligenesgroupFaecalibaculumFaecalibacterium(3)*FusicatenibacterHaemophilusHelicobacterHoldemania*KosakoniaLachnoclostridium*Lachnobacterium*LachnospraceaeNK4A136*Lachnospria*Lactobacillus(2)*Lactobacillusspp.Parabacteroides*ParaprevotellaPeptoclostridium(2)Phascolarctobacterium(2)Prevotella(2)Prevotella7PropionibacteriumProteusProvidenciaPseudocitrobacterPseudoflavonifractorRaoultellaRomboutsia*Roseburia(2)Rothia(3)*Ruminiclostridium9RuminococcaceaeUCG-005*RuminococcaceaeUCG003Staphylococcus(2)*Streptococcus(2)*Turicibacter(2)*UCG-002Veillonella* Alistipes (2)*AliterllaAnaerofilumAnaeroglobusAnaerostignumAnaerostipes(4)*Anaerotruncus*Bacteroides(5)*Bifidobacteriumspp.*Blautia(2)*Butyricicoccus(2)ButyricimonasCitrobacter(2)*ClostridiaUCG-014ClostridiuminnocuumgroupClostridiumsensustricto1*Collinsella(2)*Coprobacillus*Coprobacter(2)DefluviitaleaceaeUCG-011Dialister*Dorea*Enterobacter(3)*Enterococcus(2)*Epulopiscium*Erysipelatoclostridium(2)*Escherichia.Shigella(2)Eubacteriumhalliigroup(2)EubacteriumsiraeumgroupEubacteriumxylanophilumgroupFaecalibacterium(3)*FlavonifractorFrisingicoccusGemellaGranulicatellaHoldemania*Intestinibacter(2)Klebsiella(2)Lachnoclostridium(3)*Lachnoclostridium_5Lachnobacterium*Lachnospira*LachnospiraceaeNK4A136group*LachnospiraceaeUCG001Lactobacillus(2)*Megamonas(2)MegasphaeraOscillibacter(3)OscillospriaParabacteroides(4)*PseudobutyrivibrioRomboutsia*RobinsoniellaRothia(2)*Ruminococcus(3)RuminococcusgauvreauiigroupRuminococcaceaeNK4A214group(2)RuminococcaceaeUCG011SalmonellasppSerratiaStaphyloccus(2)*Streptococcus(3)*SubdoligranulumSutterellaTerrisporobacter(2)UBA1819Veillonella(2)*Yokenella Akkermansia muciniphila (3) *Anaerobutyricum-halliiBacteroidescaccae*Bacteroidesfragilis(2)*BacteroidesvulgatusBifidobacteriumbreveBifidobacteriumlongumButyricimonasvirosaCatenibacteriummitsuokaiClostridiumparaputrificumClostridiumspCAG798Dorealongicatena*EubacteriumeligensEubacteriumrectaleEscherichiacoli*FaecalibacteriumspCAG74FaecalibacteriumspCAG_74_58_120FirmicutesbacteriumCAG176FirmicutebacteriumCAG124FirmicutebacteriumCAG170GemmigerformicilisHaemophilusparainfluenzaeLachnospiraeceaebacterium2158FAAMethanobrevibactersmithiiMorganellamorganiiMycoplasmaspCAG472OscillibacterunclassifiedOscillospiraceaebacteriumParabacteroidesgoldsteiniiParabacteroidesmerdaePhocaeciotavulgatusPhocaeicolaplebeius*PrevotellastercoreaRoseburiahominis(2)Roseburiainulinivorans*RoseburiaintestinalisRothiamucilaginosa(2)RuminococcaceaebacteriumRuminococcaceaebacteriumAF1016RuminococcaceaebacteriumTF0643Ruminococcusbromii(12m)Ruminococcusg2(P)Ruminococcusg4(P)Ruminococcusgnavus*RuminococcusspCAG254 Akkermansia muciniphila *AnaerostipescaccaeBacteroidescaccae*BacteroidescelluoslyticusBacteroidescoprocolaBacteroidesfinegoldiiBacteroidesfragilis*Bacteroidesplebeius*BifidobacteriumbifidumBifidobacteriumpseudocatenulatumBurkholderialesbacterium_1_1_47ClostridiumdifficileClostridiumspCAG299DesulfovibriopigerDorealongicatena*EnteroclosterboltaeEscherichiacoli(3)*EubacteriumhalliiHoldemanellabiformisIntestinibacterbartlettiKlebsiellaoxytocaKlebsiellapneumoniaeKlebsiellapneumoniaeLachnospirapectinoschizaMegamonasfuniformisMegamonashypermegalePrevotellacopriRoseburiainulinivorans*RoseburiaspCAG182Ruminococcusgnavus*RuminococcuslactarisStreptococcussalivariusVibrioPhagepYD38A
Microbial genera or species with conflicting enrichment patterns in AD versus healthy cohorts